2026-09-01 11:24:22,474 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:22,479 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:22,928 INFO:     - Scale ratio 0.3374 saved as template for consistency.
2026-09-01 11:24:22,991 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,454 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_21/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,459 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_21/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,560 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_21/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,620 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_152/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,623 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_152/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,624 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:23,712 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_152/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,713 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:23,803 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,807 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,861 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,917 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_27/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,921 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_27/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:23,979 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_27/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,090 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_73/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,093 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_73/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,094 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:24,179 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_73/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,180 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:24,267 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_126/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,270 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_126/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,328 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_126/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,389 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,392 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,452 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,513 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,517 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,518 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:24,654 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,655 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:24,739 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_6/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,743 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_6/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,799 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_6/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,857 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,861 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,914 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,969 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:24,973 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,028 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,142 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_53/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,145 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_53/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,198 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_53/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,255 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,258 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,310 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,365 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_134/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,368 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_134/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,421 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_134/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,478 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,481 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,535 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,671 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,675 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,730 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,788 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,793 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,793 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:25,875 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,875 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:25,959 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_101/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:25,963 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_101/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,017 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_101/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,073 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_143/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,078 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_143/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,204 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_143/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,266 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_75/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,270 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_75/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,324 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_75/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,381 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_189/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,386 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_189/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,445 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_189/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,508 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_216/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,512 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_216/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,570 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_216/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,682 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_224/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,685 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_224/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,740 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_224/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,797 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_262/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,801 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_262/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,854 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_262/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,909 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_268/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,913 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_268/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:26,969 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_268/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,028 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_271/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,032 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_271/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,138 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_271/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,195 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_294/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,198 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_294/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,199 WARNING:     - New residues found: VAL49A. Placing them around the core.
2026-09-01 11:24:27,280 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_294/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,281 WARNING:     - New residues found: VAL49A. Placing them around the core.
2026-09-01 11:24:27,365 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,369 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,421 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,477 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,480 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,531 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,583 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_48/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,587 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_48/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,695 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_48/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,750 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,754 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,804 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,856 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_84/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,860 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_84/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,909 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_84/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,960 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_220/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:27,964 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_220/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,014 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_220/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,119 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_221/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,123 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_221/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,171 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_221/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,222 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_245/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,226 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_245/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,279 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_245/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,334 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,338 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,385 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,435 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_119/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,439 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_119/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,488 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_119/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,596 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_256/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,600 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_256/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,600 WARNING:     - New residues found: ARG47A. Placing them around the core.
2026-09-01 11:24:28,671 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_256/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,672 WARNING:     - New residues found: ARG47A. Placing them around the core.
2026-09-01 11:24:28,745 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_26/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,748 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_26/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,793 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_26/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,842 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_165/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,845 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_165/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,891 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_165/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,939 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_257/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,942 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_257/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:28,986 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_257/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,182 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,542 INFO:     - Scale ratio 0.3374 saved as template for consistency.
2026-09-01 11:24:29,580 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_21/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,616 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_152/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,616 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:29,682 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,715 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_27/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,750 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_73/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,751 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:29,813 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_126/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,850 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,886 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:29,887 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:30,010 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_6/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,045 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,078 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,113 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_53/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,146 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,178 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_134/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,211 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,243 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,274 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,275 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:30,417 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_101/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,447 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_143/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,483 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_75/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,514 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_189/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,549 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_216/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,583 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_224/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,618 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_262/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,651 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_268/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,688 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_271/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,722 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_294/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,722 WARNING:     - New residues found: VAL49A. Placing them around the core.
2026-09-01 11:24:30,901 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,934 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,965 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_48/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:30,999 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,030 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_84/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,061 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_220/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,092 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_221/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,122 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_245/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,155 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,183 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_119/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,212 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_256/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,213 WARNING:     - New residues found: ARG47A. Placing them around the core.
2026-09-01 11:24:31,264 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_26/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,292 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_165/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:31,320 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_257/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,247 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,557 INFO:     - Scale ratio 0.3374 saved as template for consistency.
2026-09-01 11:24:32,596 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_21/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,632 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_152/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,633 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:32,699 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,732 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_27/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,769 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_73/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:32,769 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:32,833 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_126/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,221 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,258 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,258 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:33,319 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_6/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,355 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,388 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,423 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_53/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,456 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,489 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_134/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,522 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,641 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,672 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,673 WARNING:     - New residues found: ASP181A. Placing them around the core.
2026-09-01 11:24:33,729 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_101/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,760 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_143/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,795 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_75/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,827 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_189/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,863 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_216/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,897 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_224/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,932 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_262/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:33,964 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_268/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,105 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_271/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,140 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_294/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,141 WARNING:     - New residues found: VAL49A. Placing them around the core.
2026-09-01 11:24:34,201 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,234 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,265 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_48/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,299 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,331 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_84/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,361 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_220/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,393 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_221/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,422 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_245/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,456 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,485 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_119/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,659 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_256/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,660 WARNING:     - New residues found: ARG47A. Placing them around the core.
2026-09-01 11:24:34,712 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_26/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,740 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_165/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:24:34,768 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/PTP1B/05_plip_interaction_graphs/plip_outputs/PTP1B_257/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.