2026-09-01 14:06:50,151 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,156 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,326 INFO:     - Scale ratio 0.3182 saved as template for consistency.
2026-09-01 14:06:50,367 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,579 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,582 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,617 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,677 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,680 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,717 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,756 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,759 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,759 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:50,809 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,809 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:50,861 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,864 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,865 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:50,918 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,918 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:50,975 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:50,978 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,011 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,046 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_11/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,049 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_11/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,050 WARNING:     - New residues found: GLN214A. Placing them around the core.
2026-09-01 14:06:51,098 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_11/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,099 WARNING:     - New residues found: GLN214A. Placing them around the core.
2026-09-01 14:06:51,150 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_22/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,153 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_22/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,217 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_22/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,252 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_106/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,255 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_106/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,290 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_106/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,328 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_204/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,331 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_204/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,331 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:51,378 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_204/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,379 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:51,428 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,431 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,463 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,496 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_141/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,499 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_141/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,530 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_141/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,563 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_229/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,566 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_229/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,566 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:51,612 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_229/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,613 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:51,726 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,892 INFO:     - Scale ratio 0.3182 saved as template for consistency.
2026-09-01 14:06:51,914 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,933 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,953 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,954 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:51,989 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:51,989 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,027 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,045 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_11/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,045 WARNING:     - New residues found: GLN214A. Placing them around the core.
2026-09-01 14:06:52,079 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_22/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,098 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_106/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,143 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_204/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,143 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,175 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,193 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_141/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,210 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_229/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,211 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,418 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,586 INFO:     - Scale ratio 0.3182 saved as template for consistency.
2026-09-01 14:06:52,608 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_3/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,627 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_4/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,649 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_105/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,649 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,684 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_181/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,684 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,770 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,788 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_11/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,789 WARNING:     - New residues found: GLN214A. Placing them around the core.
2026-09-01 14:06:52,823 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_22/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,841 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_106/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,861 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_204/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,862 WARNING:     - New residues found: CYS347A. Placing them around the core.
2026-09-01 14:06:52,894 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,911 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_141/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,928 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/GAC/05_plip_interaction_graphs/plip_outputs/GAC_229/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 14:06:52,929 WARNING:     - New residues found: CYS347A. Placing them around the core.